| Time course | # samples | time points (minutes) |
| Gasch00 1M sorbitol | 7 | 0 5 15 30 45 60 90 |
| Gasch00 1.5 mM diamide | 9 | 0 5 10 20 30 40 50 60 90 |
| Gasch00 1 mM Menadione | 10 | 0 10 20 30 40 50 80 105 120 160 |
| Gasch00 25C | 6 | 0 15 30 45 60 90 |
| Gasch00 2.5mM DTT | 9 | 0 5 15 30 45 60 90 120 180 |
| Gasch00 Amino acid adenine starvation | 6 | 0 30 60 120 240 360 |
| Gasch00 Hypo osmotic shock | 6 | 0 5 15 30 45 60 |
| Gasch00 Nitrogen Depletion | 10 | 0 30 60 120 240 480 720 1440 2880 4320 |
| Gasch00 constant 0.32 mM H2O2 | 11 | 0 10 20 30 40 50 60 80 100 120 160 |
| Gasch00 dtt | 8 | 0 15 30 60 120 240 480 |
| Gasch00 heat shock | 8 | 0 5 10 15 20 40 60 80 |
| Gasch01 DES459 mec1 0 02 MMS | 8 | 0 5 15 30 45 60 90 120 |
| Gasch01 DES460 0 02 MMS | 7 | 0 5 15 30 60 90 120 |
| Gasch01 mec1 plus gamma | 9 | 0 5 10 20 30 45 60 90 120 |
| Gasch01 wt plus gamma | 9 | 0 5 10 20 30 45 60 90 120 |
| DeRisi97 diauxic shift timecourse | 6 | 570 690 810 930 1110 1230 |
| New Data SD | 6 | 0 15 30 60 120 240 |
| New Data SD+aa | 6 | 0 15 30 60 120 240 |
| New Data SD+aaAR+ino | 6 | 0 15 30 60 120 240 |
| New Data SD+aaLI+ino | 6 | 0 15 30 60 120 240 |
| New Data SD+ino | 6 | 0 15 30 60 120 240 |
| New Data SEtOH | 6 | 0 15 30 60 120 240 |
| New Data SEtOH+aa | 6 | 0 15 30 60 120 240 |
| New Data SEtOH+aa+ino | 6 | 0 15 30 60 120 240 |
| New Data SEtOH+ino | 6 | 0 15 30 60 120 240 |
| New Data Sgal | 6 | 0 15 30 60 120 240 |
| New Data Sgal+aa | 6 | 0 15 30 60 120 240 |
| New Data Sgal+aa+ino | 6 | 0 15 30 60 120 240 |
| New Data Sgal+ino | 6 | 0 15 30 60 120 240 |
| Causton01 Acid | 7 | 0 10 20 40 60 80 100 |
| Causton01 Alkali | 7 | 0 10 20 40 60 80 100 |
| Causton01 Heat | 6 | 0 15 30 45 60 120 |
| Causton01 NaCl | 6 | 0 15 30 45 60 120 |
| Causton01 Peroxide | 6 | 0 10 20 40 60 120 |
| Causton01 Sorbitol | 6 | 0 15 30 45 90 120 |
| ORourke03 ZT WT 0.0625M KCl | 5 | 0 2.5 5 10 15 |
| ORourke03 ZT WT 0.125M KCl | 5 | 0 5 10 20 30 |
| ORourke03 ZT WT 0.25M KCl | 5 | 0 10 20 30 40 |
| ORourke03 ZT WT 0.5M KCl | 10 | 0 5 10 20 30 40 60 90 120 180 |
| ORourke03 ZT WT 1M KCl | 9 | 0 10 20 30 40 60 90 120 180 |
| ORourke03 ZT ssk1ste11 0.125M KCl | 5 | 0 5 10 20 30 |
| LaiMean05 WT Glu N2 R1 | 5 | 0 10 20 45 480 |
| LaiMean05 msn2/4 Galactose R1 | 5 | 0 10 20 45 480 |
| Zakrzewska05 | 6 | 0 15 30 60 120 180 |
| Mercier05 18733 200GY | 7 | 0 6 60 120 180 240 300 |
| Mercier05 18734 200Gy | 7 | 0 6 60 120 180 240 300 |
| Mercier05 18735 200Gy | 7 | 0 6 60 120 180 240 360 |
| Mercier05 6053 200Gy | 7 | 0 6 60 120 180 240 300 |
| Mercier05 hdf1 LM79 200Gy | 7 | 0 6 60 120 180 240 300 |